PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788386
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 362aa    MW: 41698.6 Da    PI: 8.8944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788386genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05115138123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y C+ C+++F +++ L +H r  H
  676788386 115 YFCGVCDRRFYTNDKLINHFRQiH 138
                78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10106.3E-533114IPR029060PIN domain-like
SuperFamilySSF576671.81E-5114140No hitNo description
PROSITE profilePS5015711.177115143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4115140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
CDDcd061672.01E-12181267No hitNo description
PfamPF019366.8E-7186268IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10106.3E-5200268IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MFSRFVQRIP TRKPPITSLN ITKGSTFSTI NPKPKIRVAV FWDLDNKPPA SFPPYDAALK  60
LRTAASSFGF VKLMVAYANR HAFSYVPLQV REERKERNLR NQLENKGLVK PQEPYFCGVC  120
DRRFYTNDKL INHFRQIHET ENAKRLRQIE SAKGHQRVRL VAKYSMKIEK YKRAARKMLT  180
PKEGYGLAEE LKRAGFWVKM VCDKPEAADR ALKEHMVEVM DKREVECVVL VSDDSGFADV  240
LWEAKERCLR TVVIGDLNEG ALKRVADVAY SWKEVVMGKA KKEVEKVVGK WNDRDVLKKL  300
EWSYDPALEK ARGSSSCGVW DYEFDSDDDE IENGTEVESV EIGDGGDWWE MNNEDDVGSS  360
RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872647.10.0zinc finger family protein
TrEMBLD7M0Z20.0D7M0Z2_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__3166__AT4G12240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein